Science

Questions of Science: Wave mechanics and stable atoms…

GRAVITATIONAL PUSH AND PULL

In an atom, why doesn’t the negatively charged electron collapse into the positively charged nucleus?

Is this in any way similar to the reason why large systems like stars and planets do not collapse into each other under the pull of gravity?

WHEN Ernest Rutherford, the New Zealand-born founder of nuclear physics, first discovered the atomic nucleus he did suggest that electrons did not fall toward the nucleus of the atom. This was because, he said, that the attractive forces of the nucleus were being balanced by the orbital velocity of the electron, in much the same way as a planet orbits a star.

However, the Danish physicist Niels Bohr modified this theory after Albert Einstein and Max Planck found that energy could only exist in certain discrete amounts, or quanta. This meant that electrons could be seen to have both wave and particle properties, and required that the circumference of the orbit of an electron could not be zero. This means, of course, it could never reach the nucleus.

Science has since adopted the model by the Austrian and Nobel Prize-winning theoretical physicist Erwin Schrödinger. Instead of orbiting the nucleus like planets, his model has electrons occupying ‘clouds’ where it is statistically probable that they will exist, although it has to be appreciated we may never determine an electron’s position and velocity at the same time.

Niels Bohr’s insight in 1913 is worth further explanation. The atom was known to have a small heavy nucleus, and the much lighter electrons were thought to orbit it like planets around the sun. As long as a planet does not lose energy, it can continue its orbit indefinitely.

According to the laws of electromagnetism, charged particles moving in a circle ought to radiate energy as waves. Bohr calculated that a hydrogen atom should collapse with a flash of light in a matter of femtoseconds. Because this does not happen, he proposed what has become known as the ‘old’ quantum mechanics. It asserted that the electron’s angular momentum had to be a multiple of Planck’s constant.

The rule meant that electrons could only occupy particular orbits, and there was a minimum size of orbit. Using this, Bohr was able to predict the entire spectrum of excited states of hydrogen, which, of right, was quite an astounding achievement.

But Bohr’s theory was difficult to apply to more complex atoms and was superseded by Erwin Schrödinger’s wave mechanics in 1927. This became the start of modern quantum theory.

Schrödinger’s formulation shows that an electron has a wave character, and a stable atom can be thought of as a box confining the wave. An electron has a wavelength equal to Planck’s constant divided by its momentum, so the faster an electron moves, the shorter its wavelength. To confine the electron near the nucleus the electron must move very quickly.

Conversely, a fast-moving electron can escape the pull of the nucleus. So you can think, too, of the size of an atom as resulting from a compromise between the electrons having enough kinetic energy for their waves to fit in the box, but so much that they can escape.

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Arts, Research, Science, Technology, United States

DNA Phenotyping…

FORENSIC COMPUTER SCIENCE

Intro: DNA Phenotyping is the prediction of physical appearance from DNA

Until now, DNA left at the scene of a crime only proved useful if it was already stored in a database and could be matched to a suspect.

A team of forensic experts, however, have now devised a way to recreate the face of a person, including eye and skin colour, using as little as 50 picograms (0.05 nanograms) of extracted DNA.

Called DNA phenotyping, the tests also determine the person’s ancestry, if they have freckles and can be used to match with distant relatives.

DNA phenotyping is the prediction of physical appearance from DNA and is a technique being pioneered by Virginia-based Parabon Nanolabs (example pictured). The technology can be used to generate leads in cases where there are no suspects or database hits, or to help identify remains, for example.

DNA phenotyping is the prediction of physical appearance from DNA and is a technique being pioneered by Virginia-based Parabon Nanolabs (example pictured). The technology can be used to generate leads in cases where there are no suspects or database hits, or to help identify remains, for example.

DNA phenotyping is the prediction of physical appearance from DNA and is a technique being pioneered by Virginia-based Parabon Nanolabs.

The technology can be used to generate leads in criminal cases where there are no suspects or database hits, or to help identify remains, for example.

Samples can be potentially taken from as little as a fingerprint.

Parabon’s Snapshot Forensic system is said to be able to accurately predict genetic ancestry, eye colour, hair colour, skin colour, freckling, and face shape in individuals from any ethnic background.

Each prediction is presented with a ‘measure of confidence’.

As an example, the test can say a person has green eyes with 61 per cent confidence, green or blue with 79 per cent confidence, and that they definitely don’t have brown eyes, with 99 per cent confidence.

Based on ancestry, and other markers, the test also creates a likely facial shape.

From all of this information, it builds a computer generated e-fit.

And the test will predict how two people are related, as distant as third cousins, and great-great-great-great-grandparents.

‘DNA carries the genetic instruction set for an individual’s physical characteristics, producing the wide range of appearances among people,’ explained Parabon Nanolabs.

‘By determining how genetic information translates into physical appearance, it is possible to “reverse-engineer” DNA into a physical profile.

‘Snapshot reads tens of thousands of genetic variants from a DNA sample and uses this information to predict what an unknown person looks like.’

The project was supported with funding from the the US Department of Defense (DoD).

Samples can be taken from as little as a fingerprint. Parabon's Snapshot Forensic system is said to be able to accurately predict genetic ancestry, eye colour, hair colour, skin colour, freckling, and face shape in individuals from any ethnic background (example pictured).

Samples can be taken from as little as a fingerprint. Parabon’s Snapshot Forensic system is said to be able to accurately predict genetic ancestry, eye colour, hair colour, skin colour, freckling, and face shape in individuals from any ethnic background (example pictured).

Each prediction is presented with a ‘measure of confidence’. As an example, the test can say a person has green eyes with 61 per cent confidence, green or blue with 79 per cent confidence, and that they definitely don’t have brown eyes, with 99 per cent confidence. A series of example charts is pictured.

Each prediction is presented with a ‘measure of confidence’. As an example, the test can say a person has green eyes with 61 per cent confidence, green or blue with 79 per cent confidence, and that they definitely don’t have brown eyes, with 99 per cent confidence. A series of example charts is pictured.

Ellen McRae Greytak, Parabon’s director of bioinformatics told Popular Science that the system has been used in 10 cases across the US, and the first department to release a Snapshot report was the Columbia Police Department.

It produced a profile for a ‘person of interest’ in the murder of 25-year-old Candra Alston and her daughter Malaysia Boykin in 2011. (Investigators in South Carolina are hoping the DNA technique could lead to to a breakthrough in the unsolved murder case of Malaysia Boykin, three, (left) and her mother Candra Alston (right) in 2011).

The only piece of evidence left at the scene was an unspecified DNA sample.

There were no witnesses to the murder, so the local authorities turned to the forensic phenotyping and found the person was a male with dark-skinned, brown hair and brown eyes (profile pictured).

There were no witnesses to the murder, so the local authorities turned to the forensic phenotyping and found the person was a male with dark-skinned, brown hair and brown eyes (profile pictured).

There were no witnesses to the murder, so the local authorities turned to the forensic phenotyping and found the person was a male with dark-skinned, brown hair and brown eyes.

Mark Vinson, a cold case investigator with the Columbia police department, said that more than 200 people were interviewed in connection with the deaths.

Around 150 of them submitted their DNA – but none matched the sample left at the scene.

 

Ancillary:

FIND LONG-LOST RELATIVES USING YOUR DNA

Family history site Ancestry has extended its AncestryDNA service – a home testing kit that unlocks the secrets of a person’s genetic ethnicity – to the UK.

The results can be cross-checked with millions of family trees to help people discover unknown relatives.

It uses microarray-based autosomal DNA testing, which looks at person’s entire genome at more than 700,000 locations using saliva.

Since it was released in 2012, AncestryDNA has been used by around 700,000 people.

All of these results have been stored on a secure, encrypted database, and each set of results is linked to a person’s individual Ancestry account and subsequent family tree.

AncestryDNA can help people identify relationships with unknown relatives through a list of possible DNA member matches.

 

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Health, Medical, Science

Questions of Science: ‘Rubbing salt in to the wound’…

Health

Rubbing salt in the wound was a way of preventing infection. But how did it work?

Applying salt to a wound creates a highly saline environment, one in which it is difficult for microbes to grow. The high concentration gradient between the salt solution and the fluid inside bacterial cells makes it far more difficult for the microbes to extract water from the solution without using a lot more energy. As a result, the bacteria become placid and dehydrated and cannot function normally or proliferate.

Concentrated sugar solutions also have a dehydrating effect. This accounts for the extended shelf life of chutneys and preserves, and explains why honey can be used on wound dressings and, ironically, on bee stings as an antiseptic.

Blood is 83 per cent water. Because salt is hygroscopic, it absorbs water, accelerating the tendency for blood to clot and drying the wound. This helps deny microorganisms a favourable habitat. Saline solutions do generate osmotic pressure – it forces water out of microbes to equalise the salt concentration across their cell membranes. This can kill them, so salt acts as a disinfectant.

The stinging of the wound signals that salt does cause injury to the body. But in the absence of a better option at the time, killing a few healthy skin cells was deemed acceptable collateral damage when the alternative may have been a serious infection or possible death.

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